Modeling cell-to-cell spread of hepatitis C viral infection in vitro using agent-based modeling approach


Background: Mechanisms that lead to viral chronicity are poorly understood, but cell-to-cell (CTC) spread has been implicated in the establishment of chronic infections. Stochastic mathematical models were previously developed to explore the nature of hepatitis C virus (HCV) CTC spread, however, they were not designed to differentiate focus expansion due to spread vs cell proliferation and were not able to mimic focus shape, cell size, or foci merging. Here we have developed an agent-based model (ABM) to more fully describe this biological system.

Methods: HCV infection was initiated with 50 HCV FFU and at 17h post inoculation (p.i.), the inoculum was removed and neutralizing anti-E2 was added to block cell-free virus transmission. Cell number was monitored with or without inhibitors that were added to block specific cellular receptors and therefore determine the effect of these factors on HCV CTC spread. Cells were fixed at 72h p.i., stained for HCV NS5A and HCV+ cells per foci counted as a measure of cell-to-cell spread. An ABM was developed in which each agent represents an individual cell that can divide to become up to 4 smaller size cells as the cell monolayer becomes more tightly packed.

Results/Conclusion: The ABM recapitulates the natural increase of in vitro cell confluence with concomitant decrease in cell size by allowing the proliferation of individual cells through different cell cycles and infections stages. The model suggests the observed irregular HCV foci shape is the product of CTC spread through individual cell behaviors and also allows to predict the number of merging foci. Lastly, the model fits the inhibitors data well and estimates the efficacy of inhibitors in slowing HCV CTC.

Adam A.C. Burns
Adam A.C. Burns
Computer Scientist

I am a researcher at Hennepin Healthcare Research Institute. My research interests include applied mathematics, mechanistic, and machine learning modeling approaches to address problems in biology and medicine.